Professor Beer's Journal Club
Current Month Journal Club Issue
Comparing Serum Proteomics Preparation Methods
Researchers at the @University of Groningen benchmarked six common serum proteomics sample preparation workflows to determine which methods best preserve quantitative accuracy for low-abundance proteins in shotgun proteomics.
Using pooled human serum spiked with seven proteins across multiple concentration ranges, they found that Seer Proteograph XT and PreOmics ENRICH-iST consistently delivered the best quantitative accuracy and deepest proteome coverage, while simpler methods like IPA/TCA and in-gel digestion were more reproducible and cost-effective but less sensitive for low-abundance targets.
The study highlights that no single workflow is ideal for every application, emphasizing tradeoffs among sensitivity, reproducibility, cost, automation, and sample input requirements. These findings provide a practical framework for selecting serum proteomics workflows tailored to biomarker discovery, clinical proteomics, or targeted protein analysis.
The NanoPhotometer® N120 was used to measure protein concentrations for the IPA/TCA precipitation and Top 14 depletion workflows prior to digestion and downstream LC-MS/MS analysis.
Engineering Cross-Species Delivery to Langerhans Cells
A molecular basis for flower color variation
Spring has arrived – the season for new beginnings, discovery, and advancement 🌻
A 2024 study investigates the molecular basis of flower color variation in Iris sanguinea using a combined multi-omics approach. The researchers found that differences in petal color are attributed to the accumulation of anthocyanin pigments, which is driven by the differential expression of genes involved in the flavonoid biosynthesis pathway. The researchers used a NanoPhotometer® to assess RNA quality. Overall, the study provides a gene-metabolite framework explaining flower coloration and offers insights into ornamental plant breeding and genetic improvement.
#Implen #NanoPhotometer #Spectrophotometer #RNAQuantitation #Research
Fasting Alters Igf1 Signaling Pathways and Growth Regulation in Rockfish
In a study published in General and Comparative Endocrinology, researchers at @California Polytechnic State University investigated the effect of nuritional stress on the sensitivity of liver Igf1 synthesis pathways to growth hormone. The NanoPhotometer P300 was used to quantify total RNA extracted from liver and skeletal muscle tissues of fed and fasted rockfish.
Total RNA was used for downstream qRT-PCR to determine relative liver and skeletal muscle mRNA expression. Overall, the findings suggest that growth hormone/Igf1 signaling and growth regulation is altered by food limitation.
#Implen #NanoPhotometer #Spectrophotometer #RNAQuantification #LifeScienceResearch